Resultats - Signal Processing for Omic Sciences
Signal Processing for Omic Sciences
| Tesis Doctorals Dirigides / Theses |
| 2021 | 2022 | 2023 | 2024 | 2025 |
|---|
| Títol: Novel Computational Strategies for Multi-Dimensional Metabolite Annotation and Multi-Omics Data Integration for Untargeted Metabolomics |
| Autor: Arora, Trisha |
| Director: Domingo Almenara, Xavier |
| Universitat: N/D |
| Any: 2025 |
| País: N/D |
| Títol: Innovative Tools and Strategies for Metabolomics Data Analysis |
| Autor: Llambrich Rodriguez, Maria |
| Director: Cumeras Olmeda, Raquel; Brezmes Llecha, Jesús Jorge |
| Universitat: N/D |
| Any: 2025 |
| País: N/D |
| Títol: Leveraging laser technology as synthesis method for gas-sensing materials |
| Autor: Santos Ceballos, José Carlos |
| Director: Garcia-Altares Pérez, Maria; Correig Blanchar, Francesc Xavier |
| Universitat: N/D |
| Any: 2025 |
| País: N/D |
| Títol: New strategies based on machine learning and cheminformatics for untargeted metabolomics data annotation |
| Autor: Martinez De Cripan Vazquez, Sara |
| Director: Domingo Almenara, Xavier |
| Universitat: N/D |
| Any: 2024 |
| País: N/D |
| Títol: Computational tools for the annotation of in-source fragments and matrix-related signals in MALDI Mass Spectrometry Imaging |
| Autor: Baquer Gómez, Gerard Sergi |
| Director: Ràfols Soler, Pere; Cañellas Alberich, Nicolau; Brezmes Llecha, Jesús Jorge; Correig Blanchar, Francesc Xavier |
| Universitat: N/D |
| Any: 2023 |
| País: N/D |
| Títol: Peak annotation and data analysis software tools for mass spectrometry imaging |
| Autor: Sementé Fernández, Lluc |
| Director: Brezmes Llecha, Jesús Jorge; Ràfols Soler, Pere; Correig Blanchar, Francesc Xavier |
| Universitat: N/D |
| Any: 2022 |
| País: N/D |
| Publicacions en Revista / Papers |
| 2021 | 2022 | 2023 | 2024 | 2025 |
|---|
| Títol: Advancing atherosclerosis research: The Power of lipid imaging with MALDI-MSI |
| Autors: Bookmeyer, CHM; Correig, FX; Masana, L; Magni, P; Yanes, O; Vinaixa, M |
| Any: 2025 Clau: Article |
| Revista: Atherosclerosis |
| País: N/D |
| Títol: Small intestine is not colon: a new in vitro model of the human ileum microbiome integrating the mucosal microenvironment and feeding status |
| Autors: Bron, A; Beltramo, C; Durif, C; Arora, T; Deschamps, C; Couturier, I; Domingo-Almenara, X; Otero, YF; Denis, S; Van de Wiele, T; Blanquet-Diot, S |
| Any: 2025 Clau: Article |
| Revista: Gut Microbes |
| País: N/D |
| Títol: Ketone Bodies Are Potential Prognostic Biomarkers in Relapsed/Refractory Diffuse Large B-Cell Lymphoma: Results from the R2-GDP-GOTEL Trial |
| Autors: Fernández-Castillejo, S; Badia, J; de la Cruz-merino, L; Garcia-Sáncho, AM; Carnicero-González, F; Palazón-Carrión, N; Ríos-Herranz, E; de la Cruz-vicente, F; Rueda-Domínguez, A; Martínez-Banaclocha, N; Gómez-Codina, J; Labrador, J; Martínez-Madueño, F; Amigó, N; Salar-Silvestre, A; Rodríguez-Abreu, D; Gálvez-Carvajal, L; Sánchez-Beato, M; Provencio-Pulla, M; Guirado-Risueño, M; Nogales, E; Sánchez-Margalet, V; Jiménez-Cortegana, C; Rodríguez-García, G; Cumeras, R; Gumà, J; Spanish Lymphoma Oncology Grp GOTEL |
| Any: 2025 Clau: Article |
| Revista: Cancers |
| País: N/D |
| Títol: GDF15 Circulating Levels Are Associated with Metabolic-Associated Liver Injury and Atherosclerotic Cardiovascular Disease |
| Autors: Girona, J; Guardiola, M; Barroso, E; García-Altares, M; Ibarretxe, D; Plana, N; Ribalta, J; Amigó, N; Correig, X; Vázquez-Carrera, M; Masana, L; Rodríguez-Calvo, R |
| Any: 2025 Clau: Article |
| Revista: International Journal Of Molecular Sciences |
| País: N/D |
| Títol: Comparing Campylobacter jejuni to three other enteric pathogens in OligoMM12 mice reveals pathogen-specific host and microbiota responses |
| Autors: Herzog, MKM; Peters, A; Shayya, N; Cazzaniga, M; Bra, KK; Arora, T; Barthel, M; Gül, E; Maurer, L; Kiefer, P; Christen, P; Endhardt, K; Vorholt, JA; Frankel, G; Heimesaat, MM; Bereswill, S; Gahan, CGM; Claesson, MJ; Domingo-Almenara, X; Hardt, WD |
| Any: 2025 Clau: Article |
| Revista: Gut Microbes |
| País: N/D |
| Títol: GcDUO: an open-source software for GC x GC-MS data analysis |
| Autors: Llambrich, M; van der Kloet, FM; Sementé, L; Rodrigues, A; Samanipour, S; Stefanuto, PH; Westerhuis, JA; Cumeras, R; Brezmes, J |
| Any: 2025 Clau: Article |
| Revista: Briefings In Bioinformatics |
| País: N/D |
| Títol: Circulating short-chain fatty acids and Mediterranean food patterns. A potential role for the prediction of type 2 diabetes risk: The Di@bet.es Study |
| Autors: Llauradó, G; Cedo, L; Climent, E; Badia, J; Rojo-Martínez, G; Roux, JFL; Yanes, O; Vinaixa, M; Granado-Casas, M; Mauricio, D; Fernández-Veledo, S; Vendrell, J |
| Any: 2025 Clau: Article |
| Revista: Bmc Medicine |
| País: N/D |
| Títol: Improving MALDI Mass Spectrometry Imaging Performance: Low-Temperature Thermal Evaporation for Controlled Matrix Deposition and Improved Image Quality |
| Autors: Mahamdi, T; Serna, CG; Giné, R; Rofes, J; Mohammed, SA; Ràfols, P; Correig, X; García-Altares, M; Hopf, C; Iakab, SA; Yanes, O |
| Any: 2025 Clau: Article |
| Revista: Journal Of The American Society For Mass Spectrometry |
| País: N/D |
| Títol: Artificial intelligence: the human response to approach the complexity of big data in biology |
| Autors: Melandri, G; R-Radohery, G; Beaumont, C; de Cripan, SM; Muller, C; Piras, L; Pereira, MA; Salvador, AF; Domingo-Almenara, X; Bolger, M; Colombié, S; Prigent, S; Arechederra, BG; Canela, NC; Pétriacq, P |
| Any: 2025 Clau: Review |
| Revista: Gigascience |
| País: N/D |
| Títol: Multiplatform metabolomic interlaboratory study of a whole human stool candidate reference material from omnivore and vegan donors |
| Autors: Cruz, AK; Alves, MA; Andresson, T; Bayless, AL; Bloodsworth, KJ; Bowden, JA; Bullock, K; Burnet, MC; Neto, FC; Choy, A; Clish, CB; Couvillion, SP; Cumeras, R; Dailey, L; Dallmann, G; Davis, WC; Deik, AA; Dickens, AM; Djukovic, D; Dorrestein, PC; Eder, JG; Fiehn, O; Flores, R; Gika, H; Hagiwara, KA; Pham, TH; Harynuk, JJ; Aristizabal-Henao, JJ; Hoyt, DW; Jean-François, F; Kråkström, M; Kumar, A; Kyle, JE; Lamichhane, S; Li, Y; Nam, SL; Mandal, R; de la Mata, AP; Meehan, MJ; Meikopoulos, T; Metz, TO; Mouskeftara, T; Munoz, N; Gowda, GAN; Oresic, M; Panitchpakdi, M; Pierre-Hugues, S; Raftery, D; Rushing, B; Schock, T; Seifried, H; Servetas, S; Shen, T; Sumner, S; Carrillo, KST; Thibaut, D; Trejo, JB; Van Meulebroek, L; Vanhaecke, L; Virgiliou, C; Weldon, KC; Wishart, DS; Zhang, L; Zheng, JM; Da Silva, S |
| Any: 2024 Clau: Article |
| Revista: Metabolomics |
| País: N/D |
| Títol: Assessing Data Fusion in Sensory Devices for Enhanced Prostate Cancer Detection Accuracy |
| Autors: Gómez, JKC; Vásquez, CAC; Acevedo, CMD; Llecha, JB |
| Any: 2024 Clau: Article |
| Revista: Chemosensors (Basel) |
| País: N/D |
| Títol: Battery-Less NFC Conductivity Sensor for Bovine Mastitis Detection in Farming 4.0 |
| Autors: Lazaro, A; Villarino, R; Pacios, M; Lazaro, M; Canellas, N; Girbau, D; Prieto-Simon, B |
| Any: 2024 Clau: Article |
| Revista: Ieee Access |
| País: N/D |
| Títol: SPME arrow-based extraction for enhanced targeted and untargeted urinary volatilomics |
| Autors: Llambrich, M; Ramírez, N; Cumeras, R; Brezmes, J |
| Any: 2024 Clau: Article |
| Revista: Analytica Chimica Acta |
| País: N/D |
| Títol: Easy-Amanida: An R Shiny application for the meta-analysis of aggregate results in clinical metabolomics using Amanida and Webchem |
| Autors: Llambrich, M; Satorra, P; Correig, E; Gumà, J; Brezmes, J; Tebé, C; Cumeras, R |
| Any: 2024 Clau: Review |
| Revista: Research Synthesis Methods |
| País: N/D |
| Títol: A Descriptive Study of 103 Primary Cutaneous B-Cell Lymphomas: Clinical and Pathological Characteristics and Treatment from the Spanish Lymphoma Oncology Group (GOTEL) |
| Autors: Martinez-Banaclocha, Natividad; Martinez-Madueno, Francisca; Caballe, Berta; Badia, Joan; Blanes, Mar; Bujanda, David Aguiar; Calvo, Virginia; Codina, Jose Gomez; Blanco, Cristina Quero; Espinosa, Pablo; Lavernia, Javier; Arroyo, Francisco Ramon Garcia; Risueno, Maria Guirado; Llorca, Cristina; Cumeras, Raquel; Pulla, Mariano Provencio; Guma, Josep |
| Any: 2024 Clau: Article |
| Revista: Cancers |
| País: N/D |
| Títol: Current Practices in LC-MS Untargeted Metabolomics: A Scoping Review on the Use of Pooled Quality Control Samples |
| Autors: Broeckling, CD; Beger, RD; Cheng, LL; Cumeras, R; Cuthbertson, DJ; Dasari, S; Davis, WC; Dunn, WB; Evans, AM; Fernández-Ochoa, A; Gika, H; Goodacre, R; Goodman, KD; Gouveia, GJ; Hsu, PC; Kirwan, JA; Kodra, D; Kuligowski, J; Lan, RSL; Monge, ME; Moussa, LW; Nair, SG; Reisdorph, N; Sherrod, SD; Holland, CU; Vuckovic, D; Yu, LR; Zhang, B; Theodoridis, G; Mosley, JD |
| Any: 2023 Clau: Review |
| Revista: Analytical Chemistry |
| País: N/D |
| Títol: Differences in the Stool Metabolome between Vegans and Omnivores: Analyzing the NIST Stool Reference Material |
| Autors: Cumeras, R; Shen, T; Valdiviez, L; Tippins, Z; Haffner, B; Fiehn, O |
| Any: 2023 Clau: Article |
| Revista: Metabolites |
| País: N/D |
| Títol: Serum metabolomics profiling by proton nuclear magnetic resonance spectrometry of the response to single oral macronutrient challenges in women with polycystic ovary syndrome (PCOS) compared with male and female controls |
| Autors: Escobar-Morreale, HF; Martinez-Garcia, MA; Insenser, M; Canellas, N; Correig, X; Luque-Ramirez, M |
| Any: 2023 Clau: Article |
| Revista: Biology Of Sex Differences |
| País: N/D |
| Títol: Serum metabolomics profiling by proton nuclear magnetic resonance spectroscopy reveals sexual dimorphism and masculinization of intermediate metabolism in women with polycystic ovary syndrome (PCOS) |
| Autors: Escobar-Morreale, HF; Martínez-García, MA; Insenser, M; Cañellas, N; Correig, X; Luque-Ramírez, M |
| Any: 2023 Clau: Article |
| Revista: Biology Of Sex Differences |
| País: N/D |
| Títol: Recent Advances in Batteryless NFC Sensors for Chemical Sensing and Biosensing |
| Autors: Lazaro, A; Villarino, R; Lazaro, M; Canellas, N; Prieto-Simon, B; Girbau, D |
| Any: 2023 Clau: Review |
| Revista: Biosensors |
| País: N/D |
| Títol: Similarity network fusion to identify phenotypes of small-for-gestational-age fetuses |
| Autors: Miranda, J; Paules, C; Noell, G; Youssef, L; Paternina-Caicedo, A; Crovetto, F; Cañellas, N; Garcia-Martín, ML; Amigó, N; Eixarch, E; Faner, R; Figueras, F; Simos, R; Crispi, F; Gratacós, E |
| Any: 2023 Clau: Article |
| Revista: Iscience |
| País: N/D |
| Títol: Battery-Free NFC Sub-ppm Gas Sensor for Distributed Gas Monitoring Applications at Room Temperature |
| Autors: Salehnia, F; Lazaro, A; Villarino, R; Lazaro, M; Canyellas, N; Vilanova, X; Llobet, E; Girbau, D |
| Any: 2023 Clau: Article |
| Revista: Ieee Journal Of Radio Frequency Identification |
| País: N/D |
| Títol: A Metabolites Merging Strategy (MMS): Harmonization to Enable Studies' Intercomparison |
| Autors: Villalba, H; Llambrich, M; Gumà, J; Brezmes, J; Cumeras, R |
| Any: 2023 Clau: Article |
| Revista: Metabolites |
| País: N/D |
| Títol: Urine NMR Metabolomics for Precision Oncology in Colorectal Cancer |
| Autors: Brezmes, J; Llambrich, M; Cumeras, R; Gumà, J |
| Any: 2022 Clau: Review |
| Revista: International Journal Of Molecular Sciences |
| País: N/D |
| Títol: Application of Machine Learning Solutions to Optimize Parameter Prediction to Enhance Automatic NMR Metabolite Profiling |
| Autors: Cañueto, D; Salek, RM; Bulló, M; Correig, X; Cañellas, N |
| Any: 2022 Clau: Article |
| Revista: Metabolites |
| País: N/D |
| Títol: Battery-Less NFC Potentiostat for Electrochemical Point-of-Care Sensors Based on COTS Components |
| Autors: Lazaro, A; Villarino, R; Lazaro, M; Canellas, N; Prieto-Simon, B; Girbau, D |
| Any: 2022 Clau: Article |
| Revista: Sensors |
| País: N/D |
| Títol: The untargeted urine volatilome for biomedical applications: methodology and volatilome database |
| Autors: Llambrich, M; Brezmes, J; Cumeras, R |
| Any: 2022 Clau: Review |
| Revista: Biological Procedures Online |
| País: N/D |
| Títol: Amanida: an R package for meta-analysis of metabolomics non-integral data |
| Autors: Llambrich, M; Correig, E; Gumà, J; Brezmes, J; Cumeras, R |
| Any: 2022 Clau: Article |
| Revista: Bioinformatics |
| País: N/D |
| Títol: Comprehensive volatilome and metabolome signatures of colorectal cancer in urine: A systematic review and meta¿analysis |
| Autors: Mallafré-Muro, C; Llambrich, M; Cumeras, R; Pardo, A; Brezmes, J; Marco, S; Gumà, J |
| Any: 2021 Clau: Review |
| Revista: Cancers |
| País: N/D |
| Títol: Paired maternal and fetal metabolomics reveal a differential fingerprint in preeclampsia versus fetal growth restriction |
| Autors: Youssef, L; Simoes, RV; Miranda, J; García-Martín, ML; Paules, C; Crovetto, F; Amigó, N; Cañellas, N; Gratacos, E; Crispi, F |
| Any: 2021 Clau: Article |
| Revista: Scientific Reports |
| País: N/D |
| Llibres / Books |
| 2021 | 2022 | 2023 | 2024 | 2025 |
|---|
| Capítols de Llibre / Book chapters |
| 2021 | 2022 | 2023 | 2024 | 2025 |
|---|
| Títol: Untargeted GC-MS Data Processing and Metabolite Identification Using eRah |
| Autors: de Cripan, Sara M.; Arora, Trisha; Olomí, Adrià; Finch, Jasen P.; Domingo-Almenara, Xavier |
| Any: 2024 Clau: Book Chapters |
| Altres Documents / Other documents |
| 2021 | 2022 | 2023 | 2024 | 2025 |
|---|
| Patents Sol.licitades / Patents |
| 2021 | 2022 | 2023 | 2024 | 2025 |
|---|
| Congressos / Conferences |
| 2021 | 2022 | 2023 | 2024 | 2025 |
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