MSA3D Alignment Listing

MSA3D Alignment Listing Touch any residue in the 3D(*) or PDB(**) sequences (below ||||) to see its sequence number in the browser status line at the bottom of the window.
Key: Identical Similar Different NoInfo Mismatch
Consensus Percentage is set to 100%.
Colors are based on the sequences above the separator line (|||||); these colors are then applied to the 3D sequences below the separator line regardless of identity/similarity to the 3D sequences. A Mismatch occurs when the 3D sequence pasted in the lower box (next to last line below) does not agree with the sequence of the loaded PDB file (last line below). When mismatches result solely from mispositioning of the last sequence (marked **), they can be corrected with the "Sliding" slot on the form (see the MSA3D Tutorial). The NoInfo color is applied when there is no information, either because (i) a gap was opened up in the form-specified Consensus Percentage (currently 100%) of the aligned sequences above the separator line; or (ii) the 3D structure chain extends beyond the alignment.
1    ENO_DROME| Drosophila melanogaster --------MT IKAIKARQIY DSRGNPTVEV DLTT-ELGLF RAAVPSGAST 41
2              ENOA_HUMAN| Homo sapiens ---------S ILKIHAREIF DSRGNPTVEV DLFT-SKGLF RAAVPSGAST 40
3    ENO_METJA| Methanococcus janaschii MLYNMDERFE IKDIVAREVI DSRGNPTVEV EVITKGNGYG SAIVPSGAST 50
4           ENO_ECOLI| Escherichia coli --------SK IVKIIGREII DSRGNPTVEA EVHLEGGFVG MAAAPSGAST 42
5          ENO_BACSU| Bacillus subtilis -------MPY IVDVYAREVL DSRGNPTVEV EVYTETGAFG RALVPSGAST 43
6  4ENL Yeast| Saccharomyces cerevisiae ---------A VSKVYARSVY DSRGNPTVEV ELTT-EKGVF RSIVPSGAST 40
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*                            4ENL Yeast ---------A V S K V Y A R S V Y D S R G N P T V E V E L T T -E K G V F R S I V P S G A S A V S K V Y A R S V Y D S R G N P T V E V E L T T-E K G V F R S I V P S G A S T 40

1    ENO_DROME| Drosophila melanogaster GVHEALELRD NDKANYHGKS VLKAVGHVND TLGPELIKAN LDVVDQASID 91
2              ENOA_HUMAN| Homo sapiens GIYEALELRD NDKTRYMGKG VSKAVEHINK TIAPALVSKK LNVTEQEKID 90
3    ENO_METJA| Methanococcus janaschii GTHEALELRD KEK-RFGGKG VLMAVENVNS IIRPEILG-- YDARMQREID 97
4           ENO_ECOLI| Escherichia coli GSREALELRD GDKSRFLGKG VTKAVAAVNG PIAQALIG-- KDAKDQAGID 90
5          ENO_BACSU| Bacillus subtilis GEYEAVELRD GDKDRYLGKG VLTAVNNVNE IIAPELLG-- FDVTEQNAID 91
6  4ENL Yeast| Saccharomyces cerevisiae GVHEALEMRD GDKSKWMGKG VLHAVKNVND VIAPAFVKAN IDVSDQKAVD 90
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*                            4ENL Yeast G V H E A L E M R D G D K S K W M G K G V L H A V K N V N D V I A P A F V K A N I D V S D Q K A VGV H E A L E M R D G D K S K W M G K G V L H A V K N V N D V I A P A F V K A N I D V S D Q K A V 1    ENO_DROME| Drosophila melanogaster NFMIKLDGTE NKSKFGANAI LGVSLAVAKA GAAKKGVPLY KHIADLAGN- 140
2              ENOA_HUMAN| Homo sapiens KLMIEMDGTE NKSKFGANAI LGVSLAVCKA GAVEKGVPLY RHIADLAGN- 139
3    ENO_METJA| Methanococcus janaschii TIMIELDGTP NKSRLGANAI LAVSLAVAKA AAATAKIPLY KYLGGFN--- 144
4           ENO_ECOLI| Escherichia coli KIMIDLDGTE NKSKFGANAI LAVSLANAKA AAAAKGMPLY EHIAELNGT- 139
5          ENO_BACSU| Bacillus subtilis QLLIELDGTE NKGKLGANAI LGVSMACARA AADFLQIPLY QYLGGFN--- 138
6  4ENL Yeast| Saccharomyces cerevisiae DFLISLDGTA NKSKLGANAI LGVSLAASRA AAAEKNVPLY KHLADLSKSK 140
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*                            4ENL Yeast D F L I S L D G T A N K S K L G A N A I L G V S L A A S R A A A A E K N V P L Y K H L A D L S K D F L I S L D G T A N K S K L G A N A I L G V S L A A S R A A A A E K N V P L Y K H L A D L S K S 1    ENO_DROME| Drosophila melanogaster -KEIILPVPA FNVINGGSHA GNKLAMQEFM ILPTGATSFT EAMKMGSEVY 189
2              ENOA_HUMAN| Homo sapiens -SEVILPVPA FNVINGGSHA GNKLAMQEFM ILPVGAANFR EAMRIGAEVY 188
3    ENO_METJA| Methanococcus janaschii --SYVMPVPM MNVINGGKHA GNDLDLQEFM IMPVGATSIS EAVRMGSEVY 192
4           ENO_ECOLI| Escherichia coli PGKYSMPVPM MNIINGGEHA DNNVDIQEFM IQPVGAKTVK EAIRMGSEVF 189
5          ENO_BACSU| Bacillus subtilis --SKTLPVPM MNIVNGGEHA DNNVDIQEFM IMPVGAPNFR EALRMGAQIF 186
6  4ENL Yeast| Saccharomyces cerevisiae TSPYVLPVPF LNVLNGGSHA GGALALQEFM IAPTGAKTFA EALRIGSEVY 190
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*                            4ENL Yeast T S P Y V L P V P F L N V L N G G S H A G G A L A L Q E F M I A P T G A K T F A E A L R I G S E T S P Y V L P V P F L N V L N G G S H A G G A L A L Q E F M I A P T G A K T F A E A L R I G S E HHLKNVIKAK FGLDATAVGD EGGFAPNIQS NKEALNLISD AIAKAGYT-- 237
2              ENOA_HUMAN| Homo sapiens HNLKNVIKEK YGKDATNVGD EGGFAPNILE NKEGLELLKT AIGKAGYT-- 236
3    ENO_METJA| Methanococcus janaschii HVLKNVILEK YGKNAVNVGD EGGFAPPLKT SREALDLLTE SVKKAGYE-- 240
4           ENO_ECOLI| Escherichia coli HHLAKVLKAK G--MNTAVGD EGGYAPNLGS NAEALAVIAE AVKAAGYELG 237
5          ENO_BACSU| Bacillus subtilis HSLKSVLSAK G--LNTAVGD EGGFAPNLGS NEEALQTIVE AIEKAGFKPG 234
6  4ENL Yeast| Saccharomyces cerevisiae HNLKSLTKKR YGASAGNVGD EGGVAPNIQT AEEALDLIVD AIKAAGHD-- 238
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*                            4ENL Yeast H N L K S L T K K R Y G A S A G N V G D E G G V A P N I Q T A E E A L D L I V D A I K A A G H D H N L K S L T K K R Y G A S A G N V G D E G G V A P N I Q T A E E A L D L I V D A I K A A G H D-- 239

1    ENO_DROME| Drosophila melanogaster GKIEIGMDVA ASEFYK--DG QYDLDFKNEK SDKSQWLPAD KLANLYKEFI 285
2              ENOA_HUMAN| Homo sapiens DKVVIGMDVA ASEFFR--SG KYDLDFKSP- DDPSRYISPD QLADLYKSFI 283
3    ENO_METJA| Methanococcus janaschii DEVVFALDAA ASEFYK--DG YYYVEGKK-- ------LTRE ELLDYYKALV 280
4           ENO_ECOLI| Escherichia coli KDITLAMDCA ASEFYK--DG KYVLAGEGN- ----KAFTSE EFTHFLEELT 280
5          ENO_BACSU| Bacillus subtilis EEVKLAMDAA SSEFYNKEDG KYHLSGEG-- ----VVKTSA EMVDWYEELV 278
6  4ENL Yeast| Saccharomyces cerevisiae GKVKIGLDCA SSEFFK--DG KYDLDFKNPN SDKSKWLTGP QLADLYHSLM 286
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*                            4ENL Yeast G K V K I G L D C A S S E F F K --D G K Y D L D F K N P N S D K S K W L T G P Q L A D L Y H S G K V K I G L D C A S S E F F K--D G K Y D L D F K N P N S D K S K W L T G P Q L A D L Y H S L M 286

1    ENO_DROME| Drosophila melanogaster KDFPIVSIED PFDQDHWEAW SNLTGCTD-- IQIVGDDLTV TNPKRIATAV 333
2              ENOA_HUMAN| Homo sapiens KDYPVVSIED PFDQDDWGAW QKFTASAG-- IQVVGDDLTV TNPKRIAKAV 331
3    ENO_METJA| Methanococcus janaschii DEYPIVSIED PFHEEDFEGF AMITKELD-- IQIVGDDLFV TNVERLRKGI 328
4           ENO_ECOLI| Escherichia coli KQYPIVSIED GLDESDWDGF AYQTKVLGDK IQLVGDDLFV TNTKILKEGI 330
5          ENO_BACSU| Bacillus subtilis SKYPIISIED GLDENDWEGH KLLTERLGKK VQLVGDDLFV TNTKKLSEGI 328
6  4ENL Yeast| Saccharomyces cerevisiae KRYPIVSIED PFAEDDWEAW SHFFKTAG-- IQIVADDLTV TNPKRIATAI 334
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*                            4ENL Yeast K R Y P I V S I E D P F A E D D W E A W S H F F K T A G -- I Q I V A D D L T V T N P K R I A T K R Y P I V S I E D P F A E D D W E A W S H F F K T A G-- I Q I V A D D L T V T N P K R I A T A I 334

1    ENO_DROME| Drosophila melanogaster EKKACNCLLL KVNQIGTVTE SIAAHLLAKK NGWGTMVSHR SGETEDSFIG 383
2              ENOA_HUMAN| Homo sapiens NEKSCNCLLL KVNQIGSVTE SLQACKLAQA NGWGVMVSHR SGETEDTFIA 381
3    ENO_METJA| Methanococcus janaschii EMKAANALLL KVNQIGTLSE AVDAAQLAFR NGYGVVVSHR SGETEDTTIA 378
4           ENO_ECOLI| Escherichia coli EKGIANSILI KFNQIGSLTE TLAAIKMAKD AGYTAVISHR SGETEDATIA 380
5          ENO_BACSU| Bacillus subtilis KNGVGNSILI KVNQIGTLTE TFDAIEMAKR AGYTAVISHR SGETEDSTIA 378
6  4ENL Yeast| Saccharomyces cerevisiae EKKAADALLL KVNQIGTLSE SIKAAQDSFA AGWGVMVSHR SGETEDTFIA 384
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*                            4ENL Yeast E K K A A D A L L L K V N Q I G T L S E S I K A A Q D S F A A G W G V M V S H R S G E T E D T F E K K A A D A L L L K V N Q I G T L S E S I K A A Q D S F A A G W G V M V S H R S G E T E D T F DLVVGLSTGQ IKTGAPCRSE RLAKYNQILR IEEEIGAGVK FAGKSFGKPQ 433
2              ENOA_HUMAN| Homo sapiens DLVVGLCTGQ IKTGAPCRSE RLAKYNQLLR IEEELGSKAK FAGRNFRNPL 431
3    ENO_METJA| Methanococcus janaschii DLSVALNSGQ IKTGAPARGE RTAKYNQLIR IEQELG-LSK YAGRNFRCPF 427
4           ENO_ECOLI| Escherichia coli DLAVGTAAGQ IKTGSMSRSD RVAKYNQLIR IEEALGEKAP YNGRKEIKGQ 430
5          ENO_BACSU| Bacillus subtilis DIAVATNAGQ IKTGAPSRTD RVAKYNQLLR IEDQLAETAQ YHGINSFYNL 428
6  4ENL Yeast| Saccharomyces cerevisiae DLVVGLRTGQ IKTGAPARSE RLAKLNQLLR IEEELGDNAV FAGENFHHGD 434
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*                            4ENL Yeast D L V V G L R T G Q I K T G A P A R S E R L A K L N Q L L R I E E E L G D N A V F A G E N F H H D L V V G L R T G Q I K T G A P A R S E R L A K L N Q L L R I E E E L G D N A V F A G E N F H H -- 433
2              ENOA_HUMAN| Homo sapiens AK 433
3    ENO_METJA| Methanococcus janaschii -- 427
4           ENO_ECOLI| Escherichia coli A- 431
5          ENO_BACSU| Bacillus subtilis NK 430
6  4ENL Yeast| Saccharomyces cerevisiae KL 436
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*                            4ENL Yeast K L 436
**                                  4enl K L 436

* Aligned 3D Sequence pasted into lower box (not used in determining colors).
** Sequence of currently loaded PDB file (not used in determining colors) showing colors applied to the residues in the 3D structure.

Summary of colors applied to a total of 436 residues in the PDB file sequence for a consensus level setting of 100%:
33% (142) Identical 16% (68) Similar 52% (226) Different 0% (0) NoInfo 0% (0) Mismatches